Okay, I know with all of the info gettin' thrown at you things can get outta wack. Now, let's step back a minute and consider what is going on.
You are bogging low which means you may be rich, period. NOT getting enough Air, for some reason or another. ALSO, which I could NOT agree with more, CHECK THE REEDS for petal damage, etc, first thing is first...
After REED inspection let's start with the TORS delete? How did you accomplish this, disconnect or complete removal, new cap, etc? (how are you compensating for idle?)
2.5 turns out is WAY too much on the air/pilot screw, for a stocker. Back it in to seat then turn out 1.5 turns. There is a restriction somewhere, somehow.
So the bike is stock right? pipe? now filter, etc? Are you SURE Carb jets are stock? clean? If you can give us a # on main jet that will help.
After setting air screw 1.5 turns out, what I want you to try is lift your seat and remove air box lid, replace seat and test/ride, etc.
If no change, remove seat and TAKE OUT Air filter, remove completely, leave lid off, re-install seat and test/ride. Any changes?
if so Do NOT continue to ride like this, just report back any and all info, I will check in this thread periodically over the next 2 hours...
lemme know, peace...